This page lists the software projects our group is involved in. Most of the software is hosted at bioinfweb. You can find detailed user and developer documentations to most of the projects there, if you follow the links below. Additionally formal definitions of the XML formats used in our software is privided on BioInfWeb.
|Current version:||3.4.0 (Nov 26, 2020 4:05:00 PM)|
|Developers / contributers:||Ben Stöver, Sarah Wiechers|
A Java library containing the shared components developed for different bioinfweb projects. These components are made publicly available under GNU LGPL 3.
|Current version:||(Jul 8, 2019 10:00:00 AM)|
|Developers / contributers:||Ben Stöver, Charlotte Schmitt|
A library that reads and interprets style sheets for phylogenetic trees in the TreeSS format and can apply them to any data model representing a phylogenetic tree.
|Current version:||2.15.0 beta (Apr 26, 2019 8:35:00 PM)|
|Developers / contributers:||Ben Stöver, Sarah Wiechers, Kai Müller|
TreeGraph 2 is a graphical editor for phylogenetic trees that features a variety of formatting options for the elements of a tree. Moreover, it supports several (visible or invisible) annotations (e.g. support values) for every branch or node. These annotations can be imported from Nexus tree files or text files containing data in a table (e.g. exported from a spreadsheet program).
|Current version:||0.0.0 alpha (May 15, 2018 12:00:00 PM)|
|Developers / contributers:||Ben Stöver, Jonas Bohn, Sarah van Groen, Lara Kösters, Dietmar Quandt, Kai Müller|
A multiple sequence alignment editor for phylogenetic purposes based on the functionality of LibrAlign and JPhyloIO.
|Current version:||1.0.0 beta (Mar 1, 2018 12:20:00 PM)|
|Developers / contributers:||Ben Stöver, Kai Müller|
AlignmentComparator is a GUI application to efficiently visualize and annotate differences between alternative multiple sequence alignments of the same data set.
|Current version:||0.0.1 (Mar 15, 2015 3:40:34 PM)|
|Developers / contributers:||Sarah Wiechers, Kai Müller|
Ruby on Rails application for mass assembly of primer reads generated in the GBOL5 project into contigs, auto-assignment of reads to isolates, specimens, species and management of specimens, target species, etc.
|Current version:||0.9951 (Mar 31, 2008 12:00:00 AM)|
|Developers / contributers:||Jörn Müller, Kai Müller, Dietmar Quandt|
System-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data
|Current version:||(Jan 2, 2007 1:53:11 PM)|
|Developers / contributers:||Ben Stöver, Horst Bleckmann|
GraphicMeasurer is a program that is able to analyze graphics and videos by locating and tracking objects (e.g. moving animals). The extracted geometric objects can be referenced with a spread-sheet-like result sheet language which allows to generate tables containing positions, angles or more complex data derived from the located objects.
|Current version:||0.5 (Aug 30, 2005 12:00:00 AM)|
Automates encoding of indels according to 10 different schemes, including simple binary and complex matrix character schemes.
Note that IndelCoder is not available for download anymore, since all its functionality has been moved to SeqState.